Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyltransferase | DW035_05505 | Not Available | Negative | 1323963 - 1325117 | 44222.1 |
| d-alanine--d-alanine ligase | DW035_05510 | Not Available | Negative | 1325155 - 1326132 | 35955.1 |
| rlua family pseudouridine synthase | DW035_05515 | Not Available | Negative | 1326138 - 1327208 | 40707.7 |
| pasta domain-containing protein | DW035_05520 | Not Available | Negative | 1327229 - 1327879 | 24054.0 |
| sam-dependent methyltransferase | DW035_05525 | Not Available | Positive | 1328283 - 1329482 | 44700.0 |
| abc transporter atp-binding protein | DW035_05530 | Not Available | Positive | 1329893 - 1330570 | 25054.3 |
| abc transporter permease | DW035_05535 | Not Available | Positive | 1330583 - 1332949 | 89001.0 |
| hypothetical protein | DW035_05540 | Not Available | Positive | 1332989 - 1333891 | 32110.8 |
| hypothetical protein | DW035_05545 | Not Available | Negative | 1334461 - 1334862 | 14661.1 |
| duf4249 domain-containing protein | DW035_05550 | Not Available | Negative | 1334921 - 1335883 | 36041.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

