Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | DW035_05450 | Not Available | Positive | 1311767 - 1312582 | 28990.1 |
| mannonate dehydratase | DW035_05455 | Not Available | Positive | 1312613 - 1313791 | 45113.2 |
| duf4981 domain-containing protein | DW035_05465 | Not Available | Negative | 1315213 - 1318326 | 118608.0 |
| lytic transglycosylase domain-containing protein | DW035_05470 | Not Available | Negative | 1318366 - 1319130 | 29194.7 |
| hypothetical protein | DW035_05475 | Not Available | Negative | 1319633 - 1320100 | 17417.5 |
| duf2007 domain-containing protein | DW035_05480 | Not Available | Negative | 1320097 - 1320324 | 8195.8 |
| glutamate-5-semialdehyde dehydrogenase | DW035_05485 | Not Available | Positive | 1320523 - 1321773 | 45409.4 |
| acetylornithine carbamoyltransferase | DW035_05490 | Not Available | Positive | 1321846 - 1322808 | 36414.6 |
| rhodanese-like domain-containing protein | DW035_05495 | Not Available | Negative | 1322892 - 1323290 | 14917.9 |
| hypothetical protein | DW035_05500 | Not Available | Negative | 1323301 - 1323966 | 24812.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

