Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-54 factor | DW035_05400 | Not Available | Negative | 1298975 - 1300456 | 56349.3 |
| nucleoside kinase | DW035_05405 | Not Available | Negative | 1300531 - 1302195 | 64020.6 |
| na/pi cotransporter family protein | DW035_05410 | Not Available | Positive | 1302286 - 1303980 | 63243.3 |
| alpha-1,3-galactosidase b | DW035_05415 | Not Available | Negative | 1304093 - 1305871 | 67123.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW035_05420 | Not Available | Negative | 1306047 - 1306901 | 31041.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW035_05425 | Not Available | Negative | 1306914 - 1307498 | 21425.6 |
| nad-dependent deacylase | DW035_05430 | Not Available | Positive | 1307646 - 1308353 | 26336.7 |
| rubredoxin | DW035_05435 | Not Available | Positive | 1308430 - 1308594 | 5952.92 |
| hypothetical protein | DW035_05440 | Not Available | Negative | 1308667 - 1310463 | 68979.0 |
| laci family dna-binding transcriptional regulator | DW035_05445 | Not Available | Positive | 1310676 - 1311761 | 41142.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

