Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protease | DW035_05345 | Not Available | Positive | 1287855 - 1289912 | 73931.4 |
| duf1573 domain-containing protein | DW035_05350 | Not Available | Positive | 1289931 - 1290734 | 29541.0 |
| hypothetical protein | DW035_05355 | Not Available | Positive | 1290751 - 1291218 | 17983.3 |
| hypothetical protein | DW035_05365 | Not Available | Negative | 1291933 - 1292169 | 9088.98 |
| xre family transcriptional regulator | DW035_05370 | Not Available | Positive | 1292285 - 1292443 | 5969.44 |
| insulinase family protein | DW035_05375 | Not Available | Positive | 1292553 - 1295372 | 106154.0 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | DW035_05380 | Not Available | Negative | 1295496 - 1297337 | 68445.1 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DW035_05385 | Not Available | Negative | 1297342 - 1297851 | 17675.0 |
| glycine cleavage system protein gcvh | DW035_05390 | Not Available | Negative | 1297870 - 1298250 | 14157.5 |
| hypothetical protein | DW035_05395 | Not Available | Negative | 1298285 - 1298881 | 22599.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

