Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_05290 | Not Available | Positive | 1269262 - 1272282 | 111318.0 |
| hypothetical protein | DW035_05295 | Not Available | Positive | 1272363 - 1272839 | 17857.6 |
| ompa family protein | DW035_05300 | Not Available | Positive | 1272969 - 1274030 | 39743.0 |
| duf4858 domain-containing protein | DW035_05305 | Not Available | Negative | 1274520 - 1275050 | 20493.0 |
| tonb-dependent receptor | DW035_05315 | Not Available | Positive | 1276233 - 1279166 | 109843.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_05320 | Not Available | Positive | 1279194 - 1280699 | 57596.5 |
| duf4929 domain-containing protein | DW035_05325 | Not Available | Positive | 1280736 - 1281683 | 35574.1 |
| duf5003 domain-containing protein | DW035_05330 | Not Available | Positive | 1281715 - 1283361 | 60876.1 |
| duf4458 domain-containing protein | DW035_05335 | Not Available | Positive | 1283397 - 1286060 | 100354.0 |
| hypothetical protein | DW035_05340 | Not Available | Positive | 1286079 - 1287839 | 66902.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

