Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i restriction endonuclease | DW035_05185 | Not Available | Positive | 1245327 - 1245770 | 16925.6 |
| restriction endonuclease subunit s | DW035_05190 | Not Available | Negative | 1245765 - 1246937 | 44311.6 |
| duf1016 family protein | DW035_05200 | Not Available | Negative | 1247203 - 1248354 | 44278.5 |
| sam-dependent dna methyltransferase | DW035_05205 | Not Available | Negative | 1248359 - 1249792 | 53497.9 |
| dead/deah box helicase | DW035_05210 | Not Available | Negative | 1249797 - 1252502 | 102664.0 |
| hypothetical protein | DW035_05215 | Not Available | Positive | 1253214 - 1254185 | 37204.4 |
| n-acetylmuramoyl-l-alanine amidase | DW035_05220 | Not Available | Negative | 1254215 - 1255015 | 30369.7 |
| tlpa family protein disulfide reductase | DW035_05225 | Not Available | Negative | 1255015 - 1255551 | 19873.4 |
| xre family transcriptional regulator | DW035_05230 | Not Available | Positive | 1255789 - 1256367 | 21464.4 |
| amp-binding protein | DW035_05235 | Not Available | Positive | 1256391 - 1258043 | 62513.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

