Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW035_05135 | Not Available | Positive | 1235107 - 1236852 | 66941.1 |
| hypothetical protein | DW035_05140 | Not Available | Positive | 1237003 - 1237458 | 17137.1 |
| alpha-amlyase | DW035_05145 | Not Available | Negative | 1237516 - 1237767 | 9440.39 |
| formate-dependent phosphoribosylglycinamide formyltransferase | DW035_05150 | Not Available | Negative | 1237881 - 1239050 | 42999.6 |
| meta domain-containing protein | DW035_05155 | Not Available | Negative | 1239127 - 1239954 | 29667.6 |
| saccharopine dehydrogenase family protein | DW035_05160 | Not Available | Positive | 1240101 - 1241294 | 44879.2 |
| thioredoxin-dependent thiol peroxidase | DW035_05165 | Not Available | Positive | 1241389 - 1241838 | 16970.4 |
| recombinase reca | DW035_05170 | Not Available | Positive | 1241842 - 1242891 | 37843.3 |
| restriction endonuclease subunit s | DW035_05175 | Not Available | Positive | 1243212 - 1244402 | 45178.6 |
| integrase | DW035_05180 | Not Available | Negative | 1244433 - 1245236 | 31503.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

