Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | DW035_05075 | Not Available | Negative | 1222252 - 1222797 | 20440.8 |
| 6-carboxytetrahydropterin synthase qued | DW035_05080 | Not Available | Negative | 1222784 - 1223116 | 12716.2 |
| hypothetical protein | DW035_05085 | Not Available | Positive | 1223326 - 1223619 | 11514.9 |
| cell division protein zapa | DW035_05090 | Not Available | Positive | 1223644 - 1223949 | 12101.4 |
| ribonuclease y | DW035_05095 | Not Available | Positive | 1224052 - 1225587 | 57403.5 |
| patatin family protein | DW035_05100 | Not Available | Negative | 1225631 - 1226488 | 33012.3 |
| aminopeptidase p family protein | DW035_05105 | Not Available | Positive | 1226623 - 1228014 | 52037.5 |
| aminopeptidase | DW035_05110 | Not Available | Positive | 1228055 - 1229248 | 44616.8 |
| single-stranded-dna-specific exonuclease recj | DW035_05115 | Not Available | Positive | 1229483 - 1231204 | 64823.4 |
| recq family atp-dependent dna helicase | DW035_05120 | Not Available | Positive | 1231211 - 1233106 | 73481.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

