Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sgnh/gdsl hydrolase family protein | DW035_00335 | Not Available | Positive | 99217 - 99897 | 25919.1 |
| glycoside hydrolase family 97 protein | DW035_00340 | Not Available | Positive | 100169 - 102274 | 79878.5 |
| rna polymerase sigma-70 factor | DW035_00345 | Not Available | Positive | 102428 - 102988 | 22065.7 |
| fecr family protein | DW035_00350 | Not Available | Positive | 102985 - 103986 | 38432.5 |
| susc/raga family tonb-linked outer membrane protein | DW035_00355 | Not Available | Positive | 104177 - 107566 | 124571.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW035_00360 | Not Available | Positive | 107589 - 109424 | 69772.4 |
| glycoside hydrolase family 92 protein | DW035_00365 | Not Available | Positive | 109575 - 111791 | 84073.4 |
| glycoside hydrolase family 92 protein | DW035_00370 | Not Available | Positive | 111819 - 114092 | 86424.3 |
| glycoside hydrolase family 92 protein | DW035_00375 | Not Available | Positive | 114120 - 116345 | 83283.1 |
| duf4981 domain-containing protein | DW035_00380 | Not Available | Positive | 116511 - 119858 | 127361.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

