Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW204_04910 | Not Available | Negative | 1231864 - 1233888 | 78679.3 |
| dna-binding response regulator | DW204_04915 | Not Available | Positive | 1234108 - 1234881 | 29367.1 |
| translation initiation factor | DW204_04920 | Not Available | Negative | 1235056 - 1235394 | 12621.2 |
| redox-sensing transcriptional repressor rex | DW204_04925 | Not Available | Positive | 1235505 - 1236158 | 24248.6 |
| faa hydrolase family protein | DW204_04930 | Not Available | Positive | 1236163 - 1236780 | 23197.0 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DW204_04935 | Not Available | Positive | 1236777 - 1237256 | 17541.3 |
| glycosyltransferase | DW204_04940 | Not Available | Positive | 1237270 - 1238265 | 37347.3 |
| dna repair protein radc | DW204_04945 | Not Available | Positive | 1238325 - 1239014 | 25700.9 |
| duf59 domain-containing protein | DW204_04950 | Not Available | Positive | 1239100 - 1239420 | 12071.5 |
| udp-2,3-diacylglucosamine diphosphatase | DW204_04955 | Not Available | Positive | 1239440 - 1240204 | 29855.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

