Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanine--d-alanine ligase | DW204_03850 | Not Available | Negative | 969604 - 970581 | 35955.1 |
| rlua family pseudouridine synthase | DW204_03855 | Not Available | Negative | 970587 - 971657 | 40706.7 |
| pasta domain-containing protein | DW204_03860 | Not Available | Negative | 971678 - 972328 | 24044.0 |
| rna polymerase sigma factor | DW204_03865 | Not Available | Positive | 972587 - 973165 | 22465.2 |
| beta-glucosidase | DW204_03870 | Not Available | Negative | 973224 - 975686 | 92053.1 |
| duf4974 domain-containing protein | DW204_03875 | Not Available | Positive | 976020 - 977084 | 39894.7 |
| duf4832 domain-containing protein | DW204_03880 | Not Available | Positive | 977236 - 978816 | 60625.4 |
| susc/raga family tonb-linked outer membrane protein | DW204_03885 | Not Available | Positive | 978990 - 982385 | 125932.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW204_03890 | Not Available | Positive | 982399 - 984105 | 64844.5 |
| duf5116 domain-containing protein | DW204_03895 | Not Available | Positive | 984126 - 985691 | 58758.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

