Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | DW204_02550 | Not Available | Positive | 682555 - 683211 | 24566.2 |
| sel1 repeat family protein | DW204_02555 | Not Available | Negative | 683367 - 684467 | 41882.6 |
| trna 2-thiouridine(34) synthase mnma | DW204_02560 | Not Available | Negative | 684485 - 685555 | 39845.4 |
| marc family protein | DW204_02565 | Not Available | Negative | 685625 - 686224 | 21943.0 |
| crp/fnr family transcriptional regulator | DW204_02570 | Not Available | Positive | 686408 - 687094 | 26813.7 |
| m3 family peptidase | DW204_02575 | Not Available | Positive | 687128 - 689167 | 78399.6 |
| duf4847 domain-containing protein | DW204_02580 | Not Available | Positive | 689176 - 689649 | 18152.7 |
| cmp deaminase | DW204_02585 | Not Available | Positive | 689660 - 690094 | 16230.6 |
| s41 family peptidase | DW204_02590 | Not Available | Positive | 690100 - 691752 | 61227.4 |
| 5-formyltetrahydrofolate cyclo-ligase | DW204_02595 | Not Available | Positive | 691759 - 692322 | 21583.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

