Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 92 | DW204_01840 | Not Available | Negative | 499710 - 500924 | 46307.4 |
| duf4979 domain-containing protein | DW204_01845 | Not Available | Negative | 501054 - 502505 | 53642.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW204_01850 | Not Available | Negative | 502548 - 504266 | 65496.6 |
| tonb-dependent receptor | DW204_01855 | Not Available | Negative | 504280 - 507492 | 117957.0 |
| rna polymerase subunit sigma-70 | DW204_01860 | Not Available | Negative | 507536 - 508054 | 20500.7 |
| helix-turn-helix domain-containing protein | DW204_01865 | Not Available | Negative | 508275 - 511178 | 109449.0 |
| sss family transporter | DW204_01875 | Not Available | Positive | 514477 - 516222 | 64692.4 |
| galactose mutarotase | DW204_01880 | Not Available | Positive | 516402 - 517559 | 41876.3 |
| nudix domain-containing protein | DW204_01885 | Not Available | Positive | 517609 - 518286 | 25990.2 |
| l-ribulose-5-phosphate 4-epimerase | DW204_01890 | Not Available | Positive | 518291 - 518980 | 25055.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

