Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin biosynthesis protein cobd | DW204_13755 | Not Available | Positive | 3252340 - 3253281 | 34611.6 |
| hypothetical protein | DW204_13760 | Not Available | Negative | 3253434 - 3253805 | 14201.4 |
| hypothetical protein | DW204_13765 | Not Available | Positive | 3253813 - 3254079 | 10071.5 |
| hypothetical protein | DW204_13775 | Not Available | Negative | 3254717 - 3255376 | 25458.2 |
| yqae/pmp3 family membrane protein | DW204_13780 | Not Available | Negative | 3255408 - 3255563 | 5462.19 |
| transcriptional repressor | DW204_13785 | Not Available | Negative | 3256170 - 3256598 | 16153.2 |
| aminopeptidase | DW204_13790 | Not Available | Negative | 3256679 - 3257866 | 45251.4 |
| 23s rrna (adenine(2058)-n(6))-methyltransferase erm(f) | DW204_13795 | Not Available | Positive | 3257991 - 3258791 | 30351.5 |
| hybrid sensor histidine kinase/response regulator | DW204_13800 | Not Available | Positive | 3259251 - 3261386 | 79861.2 |
| sigma-54-dependent fis family transcriptional regulator | DW204_13805 | Not Available | Positive | 3261379 - 3262701 | 49691.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

