Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaredoxin-related protein | DW204_12575 | Not Available | Negative | 2980909 - 2981208 | 10796.8 |
| site-specific integrase | DW204_12580 | Not Available | Negative | 2981343 - 2982449 | 42746.1 |
| dna-binding protein | DW204_12585 | Not Available | Negative | 2982549 - 2983460 | 35886.5 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DW204_12590 | Not Available | Negative | 2983741 - 2985183 | 52522.8 |
| gaf domain-containing protein | DW204_12595 | Not Available | Negative | 2985256 - 2985747 | 18108.6 |
| phosphorylase | DW204_12600 | Not Available | Negative | 2985820 - 2986698 | 32280.7 |
| upf0365 family protein | DW204_12605 | Not Available | Negative | 2986746 - 2987747 | 35890.6 |
| nodulation efficiency protein d (nfed) | DW204_12610 | Not Available | Negative | 2987790 - 2988254 | 16657.6 |
| tetratricopeptide repeat protein | DW204_12615 | Not Available | Negative | 2988268 - 2989686 | 53980.8 |
| adenine nucleotide alpha hydrolase family protein | DW204_12620 | Not Available | Positive | 2989920 - 2990678 | 29267.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

