Phocaeicola plebeius strain AM17-44

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius strain AM17-44 is a Gram-negative, non-motile rod that resides in the intestinal microflora of various animal hosts, including Homo sapiens (humans), Gallus gallus (chickens), and Bos (cattle). As a chemoheterotroph, this strain relies on organic compounds for energy, thriving in anaerobic conditions. The strain is mesophilic, with an optimal growth temperature of 37°C, which aligns with the typical body temperature of its mammalian hosts. The presence of a single replicon indicates a streamlined genomic organization, potentially contributing to its adaptability within the gut environment. Notably, Phocaeicola plebeius strain AM17-44 is nonsporulating, meaning it does not form spores as a survival mechanism under adverse conditions. This trait may limit its resilience compared to sporulating bacteria, but it could also reflect its adaptation to a stable, nutrient-rich intestinal habitat. This bacterium’s role in the gut ecosystem is significant, as it participates in the complex interplay of microbial communities that contribute to host health. Its presence in the intestinal microflora suggests potential implications for digestion, nutrient absorption, and overall gut microbiome dynamics. Further studies could elucidate its specific functions and interactions within the gut, enhancing our understanding of microbial ecology in both humans and animals.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
Strainstrain AM17-44

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius strain AM17-44
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain AM17-44 AM17-44.Scaf88, whole genome

Gene Summary

Adenine Count

993827 bp

Thymine Count

973116 bp

Guanine Count

754189 bp

Cytosine Count

808576 bp

Genome Length

3530609 bp

Protein-coding Genes

2788 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trk system potassium transporter trkaDW204_11625Not AvailableNegative2758972 - 276030948822.1
1-deoxy-d-xylulose-5-phosphate synthaseDW204_11630Not AvailableNegative2760306 - 276221370074.5
gscfa domain proteinDW204_11635Not AvailablePositive2762297 - 276328338481.5
bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemaseDW204_11640Not AvailablePositive2763259 - 276572492412.0
lysine exporter lyso family proteinDW204_11645Not AvailableNegative2765816 - 276641821512.9
duf340 domain-containing proteinDW204_11650Not AvailableNegative2766415 - 276669310132.1
hypothetical proteinDW204_11655Not AvailableNegative2766883 - 276736218678.4
sigma-70 family rna polymerase sigma factorDW204_11660Not AvailableNegative2767352 - 276786119949.8
acetylglutamate kinaseDW204_11665Not AvailableNegative2767927 - 276870027540.3
biosynthetic arginine decarboxylaseDW204_11670Not AvailableNegative2768718 - 277061071548.0

Displaying genes 2241 – 2250 of 2898 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.