Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | DW204_11520 | Not Available | Negative | 2726948 - 2727523 | 22045.6 |
| mate family efflux transporter | DW204_11525 | Not Available | Negative | 2727563 - 2728906 | 49059.8 |
| lyttr family transcriptional regulator | DW204_11535 | Not Available | Positive | 2731143 - 2731520 | 14243.0 |
| mate family efflux transporter | DW204_11540 | Not Available | Positive | 2731793 - 2733163 | 49873.4 |
| sdr family nad(p)-dependent oxidoreductase | DW204_11545 | Not Available | Negative | 2733153 - 2733896 | 28015.5 |
| hypothetical protein | DW204_11550 | Not Available | Negative | 2733896 - 2738143 | 161757.0 |
| hypothetical protein | DW204_11555 | Not Available | Negative | 2738168 - 2738980 | 30141.4 |
| copper-translocating p-type atpase | DW204_11560 | Not Available | Negative | 2739057 - 2741597 | 92391.8 |
| sodium:proton antiporter | DW204_11565 | Not Available | Positive | 2741736 - 2744012 | 84002.2 |
| susc/raga family tonb-linked outer membrane protein | DW204_11570 | Not Available | Negative | 2744111 - 2745826 | 62096.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

