Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endoglycosidase | DW204_08880 | Not Available | Negative | 2183435 - 2184538 | 41856.3 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW204_08885 | Not Available | Negative | 2184576 - 2186186 | 59585.4 |
| susc/raga family tonb-linked outer membrane protein | DW204_08890 | Not Available | Negative | 2186212 - 2189298 | 112316.0 |
| Trna-arg | Not Available | Not Available | Positive | 2189761 - 2189834 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 2189861 - 2189934 | Not Available |
| dna2/cas4 domain-containing protein | DW204_08905 | Not Available | Positive | 2190319 - 2193546 | 123900.0 |
| pd-(d/e)xk nuclease family protein | DW204_08910 | Not Available | Positive | 2193585 - 2196458 | 110558.0 |
| hypothetical protein | DW204_08915 | Not Available | Negative | 2196677 - 2197828 | 44368.6 |
| 1,4-alpha-glucan-branching enzyme | DW204_08920 | Not Available | Negative | 2197840 - 2199852 | 77835.2 |
| duf386 domain-containing protein | DW204_08925 | Not Available | Negative | 2199871 - 2200314 | 16440.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

