Phocaeicola plebeius strain AM17-44

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius strain AM17-44 is a Gram-negative, non-motile rod that resides in the intestinal microflora of various animal hosts, including Homo sapiens (humans), Gallus gallus (chickens), and Bos (cattle). As a chemoheterotroph, this strain relies on organic compounds for energy, thriving in anaerobic conditions. The strain is mesophilic, with an optimal growth temperature of 37°C, which aligns with the typical body temperature of its mammalian hosts. The presence of a single replicon indicates a streamlined genomic organization, potentially contributing to its adaptability within the gut environment. Notably, Phocaeicola plebeius strain AM17-44 is nonsporulating, meaning it does not form spores as a survival mechanism under adverse conditions. This trait may limit its resilience compared to sporulating bacteria, but it could also reflect its adaptation to a stable, nutrient-rich intestinal habitat. This bacterium’s role in the gut ecosystem is significant, as it participates in the complex interplay of microbial communities that contribute to host health. Its presence in the intestinal microflora suggests potential implications for digestion, nutrient absorption, and overall gut microbiome dynamics. Further studies could elucidate its specific functions and interactions within the gut, enhancing our understanding of microbial ecology in both humans and animals.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
Strainstrain AM17-44

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius strain AM17-44
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain AM17-44 AM17-44.Scaf88, whole genome

Gene Summary

Adenine Count

993827 bp

Thymine Count

973116 bp

Guanine Count

754189 bp

Cytosine Count

808576 bp

Genome Length

3530609 bp

Protein-coding Genes

2788 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding response regulatorDW204_08130Not AvailablePositive2013205 - 201390326812.5
marr family transcriptional regulatorDW204_08135Not AvailableNegative2014345 - 201479117430.3
30s ribosomal protein s6DW204_08140Not AvailablePositive2014997 - 201534413588.4
30s ribosomal protein s18DW204_08145Not AvailablePositive2015347 - 201561610561.2
50s ribosomal protein l9DW204_08150Not AvailablePositive2015635 - 201608416203.9
hypothetical proteinDW204_08155Not AvailableNegative2016439 - 20166396468.49
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabDW204_08160Not AvailablePositive2016943 - 201825948904.8
glycosyltransferase family 2 proteinDW204_08165Not AvailablePositive2018256 - 201927839203.0
septum formation protein mafDW204_08170Not AvailableNegative2019275 - 201987122692.4
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseDW204_08175Not AvailableNegative2019881 - 202039919033.1

Displaying genes 1571 – 1580 of 2898 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.