Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DW204_08080 | Not Available | Positive | 1999688 - 2000230 | 20582.7 |
| port family protein | DW204_08085 | Not Available | Positive | 2000234 - 2001526 | 48162.6 |
| ribulose-phosphate 3-epimerase | DW204_08090 | Not Available | Positive | 2001599 - 2002255 | 24096.7 |
| comec family competence protein | DW204_08095 | Not Available | Positive | 2002259 - 2004232 | 74712.6 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DW204_08100 | Not Available | Positive | 2004293 - 2005330 | 39110.2 |
| duf4827 domain-containing protein | DW204_08105 | Not Available | Positive | 2005424 - 2006104 | 25265.0 |
| phosphoglucosamine mutase | DW204_08110 | Not Available | Positive | 2006130 - 2007518 | 50445.6 |
| coproporphyrinogen iii oxidase family protein | DW204_08115 | Not Available | Negative | 2007874 - 2009007 | 43692.7 |
| elongation factor g | DW204_08120 | Not Available | Positive | 2009226 - 2011385 | 80826.7 |
| sensor histidine kinase | DW204_08125 | Not Available | Positive | 2011651 - 2013201 | 59631.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

