Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pspc domain-containing protein | DW204_07430 | Not Available | Positive | 1836876 - 1837076 | 7447.22 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DW204_07435 | Not Available | Negative | 1837282 - 1838655 | 51869.1 |
| hypothetical protein | DW204_07440 | Not Available | Positive | 1838778 - 1839125 | 13260.1 |
| acetyl-coa hydrolase/transferase family protein | DW204_07445 | Not Available | Positive | 1839169 - 1840665 | 54208.0 |
| glycosyl hydrolase | DW204_07450 | Not Available | Negative | 1840741 - 1842891 | 80539.6 |
| rhamnogalacturonan lyase | DW204_07455 | Not Available | Negative | 1842922 - 1844859 | 71466.7 |
| glycoside hydrolase family 28 protein | DW204_07460 | Not Available | Negative | 1844876 - 1846315 | 53542.5 |
| duf4450 domain-containing protein | DW204_07465 | Not Available | Negative | 1846312 - 1846935 | 23049.5 |
| beta-galactosidase | DW204_07470 | Not Available | Positive | 1847126 - 1849198 | 80097.9 |
| hypothetical protein | DW204_07475 | Not Available | Negative | 1849286 - 1852543 | 123551.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

