Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | DW204_05415 | Not Available | Positive | 1355744 - 1356439 | 25615.6 |
| s-ribosylhomocysteine lyase | DW204_05420 | Not Available | Positive | 1356447 - 1356926 | 18008.9 |
| duf4982 domain-containing protein | DW204_05425 | Not Available | Negative | 1356993 - 1359395 | 90322.0 |
| beta-glycosidase | DW204_05430 | Not Available | Negative | 1359896 - 1361491 | 60119.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW204_05435 | Not Available | Negative | 1361520 - 1363103 | 60131.9 |
| tonb-dependent receptor | DW204_05440 | Not Available | Negative | 1363121 - 1366144 | 112386.0 |
| hypothetical protein | DW204_05445 | Not Available | Negative | 1366163 - 1367626 | 54956.3 |
| response regulator | DW204_05450 | Not Available | Positive | 1367804 - 1371901 | 155905.0 |
| protein translocase subunit secdf | DW204_05455 | Not Available | Negative | 1372120 - 1375113 | 109033.0 |
| m3 family peptidase | DW204_05460 | Not Available | Negative | 1375319 - 1377412 | 78978.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

