Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW204_05360 | Not Available | Negative | 1338176 - 1339741 | 59133.7 |
| tonb-dependent receptor | DW204_05365 | Not Available | Negative | 1339753 - 1343043 | 121026.0 |
| methionine--trna ligase | DW204_05370 | Not Available | Positive | 1343331 - 1345373 | 77731.8 |
| lipopolysaccharide biosynthesis protein | DW204_05375 | Not Available | Positive | 1345469 - 1346914 | 53894.1 |
| licd family protein | DW204_05385 | Not Available | Positive | 1348005 - 1348892 | 34621.8 |
| hemolysin activation protein | DW204_05390 | Not Available | Positive | 1348907 - 1349968 | 42155.2 |
| glycosyltransferase | DW204_05395 | Not Available | Positive | 1349981 - 1351057 | 41831.9 |
| glycosyltransferase | DW204_05400 | Not Available | Positive | 1351085 - 1352347 | 47434.6 |
| glycosyltransferase | DW204_05405 | Not Available | Positive | 1352340 - 1353104 | 29517.6 |
| hypothetical protein | DW204_05410 | Not Available | Negative | 1353164 - 1355653 | 92632.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

