Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | DW204_05310 | Not Available | Negative | 1320755 - 1322245 | 56390.4 |
| holliday junction branch migration dna helicase ruvb | DW204_05315 | Not Available | Negative | 1322255 - 1323280 | 37933.5 |
| ferredoxin | DW204_05320 | Not Available | Positive | 1323400 - 1324206 | 29067.7 |
| trna 2-thiouridine(34) synthase mnma | DW204_05325 | Not Available | Positive | 1324224 - 1325351 | 42578.5 |
| duf4976 domain-containing protein | DW204_05330 | Not Available | Negative | 1325428 - 1326996 | 61424.9 |
| duf4981 domain-containing protein | DW204_05335 | Not Available | Negative | 1327021 - 1330578 | 133868.0 |
| glycoside hydrolase | DW204_05340 | Not Available | Negative | 1330616 - 1332613 | 76369.4 |
| glycoside hydrolase family 92 protein | DW204_05345 | Not Available | Negative | 1333236 - 1336004 | 103688.0 |
| ydcf family protein | DW204_05350 | Not Available | Negative | 1336039 - 1337349 | 50003.4 |
| glycerophosphodiester phosphodiesterase | DW204_05355 | Not Available | Negative | 1337262 - 1338155 | 33891.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

