Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AM17-44 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase | DW204_05110 | Not Available | Positive | 1264121 - 1265974 | 70936.1 |
| glycoside hydrolase family 97 protein | DW204_05115 | Not Available | Positive | 1266153 - 1268333 | 83217.0 |
| tonb-dependent receptor | DW204_05120 | Not Available | Positive | 1268426 - 1271437 | 111117.0 |
| starch-binding outer membrane lipoprotein susd | DW204_05125 | Not Available | Positive | 1271460 - 1273127 | 63136.7 |
| susf/suse family outer membrane protein | DW204_05130 | Not Available | Positive | 1273148 - 1274311 | 42659.8 |
| lps export abc transporter atp-binding protein | DW204_05135 | Not Available | Negative | 1274376 - 1275194 | 30881.2 |
| abc transporter permease | DW204_05140 | Not Available | Positive | 1275334 - 1276077 | 27384.5 |
| abc transporter atp-binding protein | DW204_05145 | Not Available | Positive | 1276074 - 1276847 | 29088.2 |
| trigger factor | DW204_05150 | Not Available | Positive | 1277054 - 1278400 | 51397.1 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DW204_05155 | Not Available | Positive | 1278559 - 1279230 | 24841.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

