Segatella copri strain AM22-1

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AM22-1 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This strain is specifically found in the gut habitat of Homo sapiens, indicating its role in the human microbiome. The presence of a single replicon suggests a streamlined genomic organization, which may contribute to its adaptability within the gut environment. This bacterium's anaerobic nature allows it to thrive in oxygen-limited conditions typical of the intestinal tract. The gut is a complex ecosystem, home to a diverse array of microbial species, and Segatella copri strain AM22-1 plays a part in this intricate community. By occupying this niche, it may participate in various metabolic processes that influence the overall health and function of the host's digestive system. Understanding the specific traits of Segatella copri strain AM22-1, such as its Gram-negative classification, anaerobic requirements, and rod shape, contributes to our knowledge of its ecological role in the human gut. The strain's ability to adapt to the anaerobic environment and its association with human hosts underscores its potential importance in gut health and the maintenance of microbial balance. Further exploration of this bacterium could provide insights into its contributions to human microbiome dynamics and its implications for health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AM22-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AM22-1 AM22-1.Scaf185, whole genome shotgun

Gene Summary

Adenine Count

1032444 bp

Thymine Count

1038501 bp

Guanine Count

844315 bp

Cytosine Count

840116 bp

Genome Length

3756228 bp

Protein-coding Genes

3070 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
recombinaseDW250_12085Not AvailableNegative2863054 - 286423244819.2
Trna-serNot AvailableNot AvailablePositive2864368 - 2864458Not Available
tatd family deoxyribonucleaseDW250_12095Not AvailableNegative2864599 - 286543531592.7
polyprenyl synthetase family proteinDW250_12100Not AvailableNegative2865513 - 286648737417.9
energy transducer tonbDW250_12105Not AvailableNegative2866536 - 286726126197.7
duf3308 domain-containing proteinDW250_12110Not AvailablePositive2867364 - 286831134558.7
(d)cmp kinaseDW250_12115Not AvailablePositive2868339 - 286903125991.0
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDW250_12120Not AvailableNegative2869442 - 287033233183.7
duf1573 domain-containing proteinDW250_12125Not AvailableNegative2870346 - 287141039137.0
alpha-2-macroglobulinDW250_12130Not AvailableNegative2871445 - 2877003210146.0

Displaying genes 2361 – 2370 of 3154 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.