Segatella copri strain AM22-1

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AM22-1 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This strain is specifically found in the gut habitat of Homo sapiens, indicating its role in the human microbiome. The presence of a single replicon suggests a streamlined genomic organization, which may contribute to its adaptability within the gut environment. This bacterium's anaerobic nature allows it to thrive in oxygen-limited conditions typical of the intestinal tract. The gut is a complex ecosystem, home to a diverse array of microbial species, and Segatella copri strain AM22-1 plays a part in this intricate community. By occupying this niche, it may participate in various metabolic processes that influence the overall health and function of the host's digestive system. Understanding the specific traits of Segatella copri strain AM22-1, such as its Gram-negative classification, anaerobic requirements, and rod shape, contributes to our knowledge of its ecological role in the human gut. The strain's ability to adapt to the anaerobic environment and its association with human hosts underscores its potential importance in gut health and the maintenance of microbial balance. Further exploration of this bacterium could provide insights into its contributions to human microbiome dynamics and its implications for health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AM22-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AM22-1 AM22-1.Scaf185, whole genome shotgun

Gene Summary

Adenine Count

1032444 bp

Thymine Count

1038501 bp

Guanine Count

844315 bp

Cytosine Count

840116 bp

Genome Length

3756228 bp

Protein-coding Genes

3070 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system higb family toxinDW250_00925Not AvailableNegative236532 - 23683111939.2
duf1016 domain-containing proteinDW250_00935Not AvailableNegative237391 - 23848541733.1
duf1016 family proteinDW250_00940Not AvailablePositive238664 - 23912517938.3
gamma carbonic anhydrase family proteinDW250_00945Not AvailableNegative239415 - 23992718079.8
atp-binding proteinDW250_00950Not AvailableNegative239988 - 24111243096.8
alanine--trna ligaseDW250_00955Not AvailableNegative241394 - 24405799651.5
merr family transcriptional regulatorDW250_00960Not AvailablePositive244235 - 24458213310.3
pectin esteraseDW250_00965Not AvailableNegative244631 - 24562036925.1
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseDW250_00970Not AvailableNegative245756 - 24804186929.2
lysm peptidoglycan-binding domain-containing proteinDW250_00975Not AvailableNegative248109 - 24946751496.0

Displaying genes 191 – 200 of 3154 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.