Segatella copri strain AM22-1

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AM22-1 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This strain is specifically found in the gut habitat of Homo sapiens, indicating its role in the human microbiome. The presence of a single replicon suggests a streamlined genomic organization, which may contribute to its adaptability within the gut environment. This bacterium's anaerobic nature allows it to thrive in oxygen-limited conditions typical of the intestinal tract. The gut is a complex ecosystem, home to a diverse array of microbial species, and Segatella copri strain AM22-1 plays a part in this intricate community. By occupying this niche, it may participate in various metabolic processes that influence the overall health and function of the host's digestive system. Understanding the specific traits of Segatella copri strain AM22-1, such as its Gram-negative classification, anaerobic requirements, and rod shape, contributes to our knowledge of its ecological role in the human gut. The strain's ability to adapt to the anaerobic environment and its association with human hosts underscores its potential importance in gut health and the maintenance of microbial balance. Further exploration of this bacterium could provide insights into its contributions to human microbiome dynamics and its implications for health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AM22-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AM22-1 AM22-1.Scaf185, whole genome shotgun

Gene Summary

Adenine Count

1032444 bp

Thymine Count

1038501 bp

Guanine Count

844315 bp

Cytosine Count

840116 bp

Genome Length

3756228 bp

Protein-coding Genes

3070 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDW250_09220Not AvailableNegative2208542 - 220891914027.9
crispr-associated endonuclease cas2DW250_09225Not AvailableNegative2209012 - 220947617152.2
hypothetical proteinDW250_09230Not AvailableNegative2209473 - 221051940375.2
crispr-associated endonuclease cas1DW250_09235Not AvailableNegative2210521 - 221149836862.5
tigr03986 family crispr-associated ramp proteinDW250_09240Not AvailableNegative2215011 - 221727586572.6
hypothetical proteinDW250_09245Not AvailablePositive2217356 - 221774414752.5
pyridoxamine 5'-phosphate oxidase family proteinDW250_09250Not AvailablePositive2217747 - 221826219177.0
dna alkylation repair proteinDW250_09255Not AvailablePositive2218308 - 221898826806.4
dna alkylation repair proteinDW250_09260Not AvailablePositive2219061 - 22192607945.63
ribonuclease hDW250_09265Not AvailablePositive2219263 - 221970316497.9

Displaying genes 1811 – 1820 of 3154 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.