Pedobacter nutrimenti strain DSM 27372

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nutrimenti strain DSM 27372 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolism. This trait is essential for its ecological role, as it allows the organism to thrive in oxygen-rich environments. The strain possesses flagella, which are tail-like structures that enable motility, suggesting that it can actively move towards favorable conditions or nutrient sources. The genetic makeup of Pedobacter nutrimenti strain DSM 27372 is characterized by a single replicon, which refers to the presence of one circular piece of DNA that contains all the genetic information necessary for its functions and reproduction. This simplicity in its genomic structure can imply a streamlined metabolic process, adapted to its environmental niche. The strain is cataloged under the accession number QKLU00000000.1, which provides a reference for researchers seeking to access its genomic data for further studies. From a biological and ecological perspective, the aerobic nature of Pedobacter nutrimenti strain DSM 27372, along with its motility, positions it as a potentially important player in its ecosystem. Its ability to navigate through its environment and utilize available oxygen may contribute to nutrient cycling and the breakdown of organic materials, further highlighting its significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nutrimenti
Strainstrain DSM 27372

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nutrimenti strain DSM 27372 Ga0070246_121, whole genome

Gene Summary

Adenine Count

1672028 bp

Thymine Count

1662865 bp

Guanine Count

1202051 bp

Cytosine Count

1178159 bp

Genome Length

5716991 bp

Protein-coding Genes

4924 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna threonylcarbamoyladenosine biosynthesis protein tsabB0O44_10158Not AvailablePositive96130 - 9681625109.3
hypothetical proteinB0O44_10159Not AvailableNegative96818 - 9822452899.4
hypothetical proteinB0O44_10160Not AvailableNegative98550 - 10011259663.4
uncharacterized membrane protein ygdd (tmem256/duf423 family)B0O44_10161Not AvailablePositive100364 - 10075014144.6
replication restart dna helicase priaB0O44_10162Not AvailablePositive100750 - 10323094221.9
protein-l-isoaspartate(d-aspartate) o-methyltransferaseB0O44_10163Not AvailablePositive103335 - 10399124627.8
ssra-binding proteinB0O44_10164Not AvailableNegative103992 - 10444117581.5
manganese transport proteinB0O44_10165Not AvailableNegative104537 - 10639367936.4
dtxr family iron (metal) dependent repressorB0O44_10166Not AvailableNegative106395 - 10704824526.6
lrp/asnc family leucine-responsive transcriptional regulatorB0O44_10167Not AvailablePositive107205 - 10767517938.1

Displaying genes 61 – 70 of 4979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.