Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna threonylcarbamoyladenosine biosynthesis protein tsab | B0O44_10158 | Not Available | Positive | 96130 - 96816 | 25109.3 |
| hypothetical protein | B0O44_10159 | Not Available | Negative | 96818 - 98224 | 52899.4 |
| hypothetical protein | B0O44_10160 | Not Available | Negative | 98550 - 100112 | 59663.4 |
| uncharacterized membrane protein ygdd (tmem256/duf423 family) | B0O44_10161 | Not Available | Positive | 100364 - 100750 | 14144.6 |
| replication restart dna helicase pria | B0O44_10162 | Not Available | Positive | 100750 - 103230 | 94221.9 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | B0O44_10163 | Not Available | Positive | 103335 - 103991 | 24627.8 |
| ssra-binding protein | B0O44_10164 | Not Available | Negative | 103992 - 104441 | 17581.5 |
| manganese transport protein | B0O44_10165 | Not Available | Negative | 104537 - 106393 | 67936.4 |
| dtxr family iron (metal) dependent repressor | B0O44_10166 | Not Available | Negative | 106395 - 107048 | 24526.6 |
| lrp/asnc family leucine-responsive transcriptional regulator | B0O44_10167 | Not Available | Positive | 107205 - 107675 | 17938.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

