Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative damage-inducible protein dinb | B0O44_109221 | Not Available | Positive | 5125763 - 5126254 | 18813.7 |
| pseudouridine synthase | B0O44_109222 | Not Available | Positive | 5126327 - 5127334 | 36856.3 |
| 23s rrna m(2)a-2503 methyltransferase | B0O44_109223 | Not Available | Positive | 5127402 - 5128457 | 40031.0 |
| comf family protein | B0O44_109224 | Not Available | Positive | 5128504 - 5129199 | 26232.2 |
| pas domain s-box-containing protein | B0O44_109225 | Not Available | Negative | 5129442 - 5132213 | 105323.0 |
| glycine hydroxymethyltransferase | B0O44_109226 | Not Available | Negative | 5132232 - 5133503 | 45895.6 |
| 1-deoxy-d-xylulose-5-phosphate synthase | B0O44_109227 | Not Available | Positive | 5133804 - 5135732 | 70539.8 |
| hypothetical protein | B0O44_109228 | Not Available | Positive | 5135899 - 5136210 | 11109.3 |
| two-component system response regulator hydg | B0O44_109229 | Not Available | Positive | 5136294 - 5137631 | 49266.4 |
| hpt domain-containing protein | B0O44_109230 | Not Available | Negative | 5137616 - 5140117 | 95014.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

