Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gh3 auxin-responsive promoter | B0O44_10970 | Not Available | Positive | 4928198 - 4929706 | 58455.9 |
| tonb-dependent receptor-like protein | B0O44_10971 | Not Available | Positive | 4929936 - 4932866 | 107529.0 |
| two-component system alkaline phosphatase synthesis response regulator phop | B0O44_10972 | Not Available | Negative | 4932899 - 4933267 | 13751.8 |
| cd2+/zn2+-exporting atpase | B0O44_10973 | Not Available | Negative | 4933388 - 4935382 | 71973.2 |
| fur family ferric uptake transcriptional regulator | B0O44_10974 | Not Available | Negative | 4935431 - 4935862 | 16329.8 |
| Trna-asn | Not Available | Not Available | Positive | 4936132 - 4936205 | Not Available |
| sugar/nucleoside kinase (ribokinase family) | B0O44_10976 | Not Available | Positive | 4936347 - 4937261 | 33675.5 |
| putative heme/steroid binding protein | B0O44_10977 | Not Available | Negative | 4937337 - 4937576 | 9247.92 |
| rna polymerase sigma-70 factor (ecf subfamily) | B0O44_10978 | Not Available | Negative | 4937687 - 4938217 | 20311.4 |
| udp-n-acetylmuramate dehydrogenase | B0O44_10979 | Not Available | Negative | 4938389 - 4939405 | 37062.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

