Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | B0O44_10940 | Not Available | Positive | 4895689 - 4897101 | 51361.2 |
| hexosaminidase | B0O44_10941 | Not Available | Positive | 4897169 - 4899136 | 74371.2 |
| trna pseudouridine(38-40) synthase | B0O44_10942 | Not Available | Positive | 4899141 - 4899950 | 31338.0 |
| putative membrane protein ypha (doxx/surf4 family) | B0O44_10943 | Not Available | Positive | 4900039 - 4900485 | 16400.8 |
| acyl-coa hydrolase | B0O44_10944 | Not Available | Positive | 4900555 - 4900953 | 15066.0 |
| shikimate kinase | B0O44_10945 | Not Available | Negative | 4900919 - 4901431 | 18878.2 |
| peptide/nickel transport system permease protein | B0O44_10946 | Not Available | Negative | 4901459 - 4902514 | 39519.8 |
| doxx-like protein | B0O44_10947 | Not Available | Negative | 4902517 - 4903674 | 43828.8 |
| uncharacterized protein duf1599 | B0O44_10948 | Not Available | Negative | 4903737 - 4904279 | 20640.9 |
| dihydropteroate synthase | B0O44_10949 | Not Available | Positive | 4904343 - 4905206 | 31941.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

