Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-val | Not Available | Not Available | Positive | 4659043 - 4659120 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 4659154 - 4659231 | Not Available |
| dna replication and repair protein reco | B0O44_108134 | Not Available | Negative | 4659339 - 4660064 | 28149.4 |
| undecaprenol kinase/diacylglycerol kinase (atp) | B0O44_108135 | Not Available | Negative | 4660064 - 4660411 | 12140.2 |
| 23s rrna (adenine1618-n6)-methyltransferase | B0O44_108136 | Not Available | Positive | 4660441 - 4661415 | 36257.7 |
| tonb-linked susc/raga family outer membrane protein | B0O44_108137 | Not Available | Positive | 4661701 - 4665066 | 123616.0 |
| susd-like starch-binding protein associating with outer membrane | B0O44_108138 | Not Available | Positive | 4665082 - 4666692 | 58992.3 |
| protein-tyrosine phosphatase | B0O44_108139 | Not Available | Positive | 4666719 - 4667531 | 30146.6 |
| hypothetical protein | B0O44_108140 | Not Available | Negative | 4667613 - 4668902 | 50411.3 |
| dtxr family iron (metal) dependent repressor | B0O44_108141 | Not Available | Negative | 4668915 - 4669580 | 25129.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

