Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| organic radical activating enzyme | B0O44_101389 | Not Available | Negative | 476957 - 477580 | 23429.1 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit | B0O44_101390 | Not Available | Positive | 477678 - 478013 | 12811.4 |
| methylenetetrahydrofolate dehydrogenase (nadp+)/methenyltetrahydrofolate cyclohydrolase | B0O44_101391 | Not Available | Negative | 478024 - 478905 | 31871.8 |
| gtp-binding protein lepa | B0O44_101392 | Not Available | Negative | 478929 - 480716 | 66759.0 |
| copper homeostasis protein cutc | B0O44_101393 | Not Available | Negative | 480786 - 481526 | 26728.5 |
| n4-(beta-n-acetylglucosaminyl)-l-asparaginase | B0O44_101394 | Not Available | Negative | 481544 - 482578 | 37135.9 |
| putative amidohydrolase | B0O44_101395 | Not Available | Negative | 482587 - 483390 | 31012.1 |
| methionine aminotransferase | B0O44_101396 | Not Available | Negative | 483414 - 484559 | 42698.6 |
| hypothetical protein | B0O44_101397 | Not Available | Positive | 484661 - 485431 | 28750.9 |
| hypothetical protein | B0O44_101398 | Not Available | Positive | 485476 - 486258 | 29931.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

