Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tagaturonate reductase | B0O44_107183 | Not Available | Positive | 4400843 - 4402333 | 55545.9 |
| altronate hydrolase | B0O44_107184 | Not Available | Positive | 4402352 - 4404004 | 59506.9 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | B0O44_107185 | Not Available | Positive | 4404071 - 4404901 | 31210.2 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | B0O44_107186 | Not Available | Positive | 4404901 - 4405716 | 28744.8 |
| glucuronate isomerase | B0O44_107187 | Not Available | Positive | 4405741 - 4407141 | 54230.3 |
| 2-dehydro-3-deoxygluconokinase | B0O44_107188 | Not Available | Positive | 4407143 - 4408177 | 38358.0 |
| 2-dehydro-3-deoxyphosphogluconate aldolase/(4s)-4-hydroxy-2-oxoglutarate aldolase | B0O44_107189 | Not Available | Positive | 4408199 - 4408858 | 24148.6 |
| acs family hexuronate transporter-like mfs transporter | B0O44_107190 | Not Available | Positive | 4408913 - 4410271 | 49940.7 |
| acyl-coa reductase-like nad-dependent aldehyde dehydrogenase | B0O44_107191 | Not Available | Positive | 4410302 - 4411927 | 60374.0 |
| laci family transcriptional regulator | B0O44_107192 | Not Available | Negative | 4411967 - 4412974 | 37316.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

