Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein with beta-barrel domain | B0O44_106193 | Not Available | Positive | 4040746 - 4041528 | 29525.9 |
| undecaprenyl diphosphate synthase | B0O44_106194 | Not Available | Positive | 4041624 - 4042364 | 28468.1 |
| beta-barrel assembly machine subunit bama | B0O44_106195 | Not Available | Positive | 4042478 - 4044994 | 93984.7 |
| periplasmic chaperone for outer membrane proteins skp | B0O44_106196 | Not Available | Positive | 4045003 - 4045533 | 20526.7 |
| outer membrane protein | B0O44_106197 | Not Available | Positive | 4045577 - 4046146 | 20498.6 |
| glutamate racemase | B0O44_106198 | Not Available | Positive | 4046219 - 4047040 | 30602.1 |
| amidophosphoribosyltransferase | B0O44_106199 | Not Available | Positive | 4047164 - 4049065 | 71956.1 |
| threonine/homoserine/homoserine lactone efflux protein | B0O44_106200 | Not Available | Negative | 4049149 - 4049775 | 23495.8 |
| fhs family l-fucose permease-like mfs transporter | B0O44_106201 | Not Available | Positive | 4049925 - 4051532 | 57429.1 |
| dcmp deaminase | B0O44_106202 | Not Available | Positive | 4051633 - 4052079 | 16130.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

