Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase (nad) | B0O44_106163 | Not Available | Negative | 4010633 - 4011571 | 32749.9 |
| apolipoprotein d and lipocalin family protein | B0O44_106164 | Not Available | Positive | 4011724 - 4012206 | 19096.1 |
| dna polymerase-3 subunit alpha | B0O44_106165 | Not Available | Positive | 4012297 - 4016730 | 167269.0 |
| thioredoxin | B0O44_106166 | Not Available | Positive | 4016870 - 4017187 | 11534.0 |
| uncharacterized protein duf58 | B0O44_106167 | Not Available | Positive | 4017271 - 4018191 | 35583.8 |
| hypothetical protein | B0O44_106168 | Not Available | Negative | 4018188 - 4018637 | 17627.3 |
| hypothetical protein | B0O44_106169 | Not Available | Negative | 4018681 - 4019199 | 19600.8 |
| rna polymerase sigma-70 factor (ecf subfamily) | B0O44_106170 | Not Available | Negative | 4019234 - 4019794 | 22047.3 |
| transketolase | B0O44_106171 | Not Available | Negative | 4019801 - 4020754 | 34361.5 |
| transketolase | B0O44_106172 | Not Available | Negative | 4020806 - 4021651 | 30748.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

