Pedobacter nutrimenti strain DSM 27372

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nutrimenti strain DSM 27372 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolism. This trait is essential for its ecological role, as it allows the organism to thrive in oxygen-rich environments. The strain possesses flagella, which are tail-like structures that enable motility, suggesting that it can actively move towards favorable conditions or nutrient sources. The genetic makeup of Pedobacter nutrimenti strain DSM 27372 is characterized by a single replicon, which refers to the presence of one circular piece of DNA that contains all the genetic information necessary for its functions and reproduction. This simplicity in its genomic structure can imply a streamlined metabolic process, adapted to its environmental niche. The strain is cataloged under the accession number QKLU00000000.1, which provides a reference for researchers seeking to access its genomic data for further studies. From a biological and ecological perspective, the aerobic nature of Pedobacter nutrimenti strain DSM 27372, along with its motility, positions it as a potentially important player in its ecosystem. Its ability to navigate through its environment and utilize available oxygen may contribute to nutrient cycling and the breakdown of organic materials, further highlighting its significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nutrimenti
Strainstrain DSM 27372

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nutrimenti strain DSM 27372 Ga0070246_121, whole genome

Gene Summary

Adenine Count

1672028 bp

Thymine Count

1662865 bp

Guanine Count

1202051 bp

Cytosine Count

1178159 bp

Genome Length

5716991 bp

Protein-coding Genes

4924 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
preprotein translocase subunit seceB0O44_106143Not AvailablePositive3988805 - 39890027217.84
transcription antitermination protein nusgB0O44_106144Not AvailablePositive3989016 - 398955820622.2
large subunit ribosomal protein l11B0O44_106145Not AvailablePositive3989660 - 399010315607.0
large subunit ribosomal protein l1B0O44_106146Not AvailablePositive3990127 - 399082524445.8
large subunit ribosomal protein l10B0O44_106147Not AvailablePositive3990828 - 399134918649.5
large subunit ribosomal protein l7/l12B0O44_106148Not AvailablePositive3991411 - 399178512835.5
dna-directed rna polymerase subunit betaB0O44_106149Not AvailablePositive3991941 - 3995744142463.0
dna-directed rna polymerase subunit beta'B0O44_106150Not AvailablePositive3995817 - 4000103159672.0
uncharacterized protein duf3467B0O44_106151Not AvailablePositive4000206 - 400052011721.1
trna dimethylallyltransferaseB0O44_106152Not AvailableNegative4000527 - 400143834777.7

Displaying genes 3501 – 3510 of 4979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.