Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosyl 1,2-cyclic phosphodiesterase | B0O44_10693 | Not Available | Negative | 3936167 - 3937018 | 31261.4 |
| hypothetical protein | B0O44_10694 | Not Available | Negative | 3937008 - 3937808 | 29470.5 |
| 4fe-4s dicluster protein | B0O44_10695 | Not Available | Negative | 3937829 - 3939124 | 48189.0 |
| Trna-phe | Not Available | Not Available | Positive | 3939359 - 3939431 | Not Available |
| gntr family transcriptional regulator/mocr family aminotransferase | B0O44_10697 | Not Available | Negative | 3939492 - 3940967 | 55191.9 |
| ahpd family alkylhydroperoxidase | B0O44_10698 | Not Available | Positive | 3941047 - 3941484 | 16489.0 |
| pyruvate dehydrogenase (quinone) | B0O44_10699 | Not Available | Negative | 3941548 - 3943284 | 62823.0 |
| putative iron-regulated membrane protein | B0O44_106100 | Not Available | Positive | 3943459 - 3944799 | 49321.2 |
| putative mfs family arabinose efflux permease | B0O44_106101 | Not Available | Negative | 3944792 - 3946030 | 45546.4 |
| lysr family cyn operon transcriptional activator | B0O44_106102 | Not Available | Positive | 3946130 - 3947002 | 32772.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

