Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | B0O44_104675 | Not Available | Positive | 3374892 - 3375083 | 7397.71 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | B0O44_104676 | Not Available | Positive | 3375222 - 3375887 | 25123.6 |
| recombination protein reca | B0O44_104677 | Not Available | Positive | 3376008 - 3377021 | 36382.0 |
| hypothetical protein | B0O44_104678 | Not Available | Negative | 3377091 - 3377276 | 6826.93 |
| n6-l-threonylcarbamoyladenine synthase | B0O44_104679 | Not Available | Negative | 3377291 - 3378292 | 36138.7 |
| uncharacterized protein duf490 | B0O44_104680 | Not Available | Positive | 3379020 - 3382784 | 139585.0 |
| 3,4-dihydroxy 2-butanone 4-phosphate synthase/gtp cyclohydrolase ii | B0O44_104681 | Not Available | Negative | 3382792 - 3384003 | 44172.2 |
| lipopolysaccharide export system permease protein | B0O44_104682 | Not Available | Negative | 3384138 - 3385514 | 51641.6 |
| hypothetical protein | B0O44_104683 | Not Available | Negative | 3385611 - 3385991 | 14836.5 |
| Trna-met | Not Available | Not Available | Positive | 3386128 - 3386201 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

