Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyl-diphosphatase | B0O44_104665 | Not Available | Positive | 3363397 - 3364197 | 29703.6 |
| trna pseudouridine55 synthase | B0O44_104666 | Not Available | Positive | 3364197 - 3364892 | 26121.5 |
| uncharacterized membrane-anchored protein yitt (duf2179 family) | B0O44_104667 | Not Available | Positive | 3364895 - 3365758 | 31189.3 |
| riboflavin kinase/fmn adenylyltransferase | B0O44_104668 | Not Available | Positive | 3365771 - 3366718 | 35682.0 |
| hypothetical protein | B0O44_104669 | Not Available | Positive | 3366766 - 3367092 | 12072.8 |
| cpa2 family monovalent cation:h+ antiporter-2 | B0O44_104670 | Not Available | Positive | 3367150 - 3369378 | 81759.2 |
| putative membrane protein duf2157 | B0O44_104671 | Not Available | Positive | 3369405 - 3370442 | 40345.4 |
| threonine/homoserine/homoserine lactone efflux protein | B0O44_104672 | Not Available | Negative | 3370446 - 3371069 | 23360.3 |
| excinuclease abc subunit a | B0O44_104673 | Not Available | Negative | 3371164 - 3373968 | 104214.0 |
| rna polymerase sigma-70 factor (ecf subfamily) | B0O44_104674 | Not Available | Positive | 3374232 - 3374807 | 22436.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

