Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydrogenase | B0O44_104325 | Not Available | Positive | 2966486 - 2967583 | 40141.2 |
| 2-isopropylmalate synthase | B0O44_104326 | Not Available | Positive | 2967587 - 2968759 | 42989.5 |
| l-threonine ammonia-lyase | B0O44_104327 | Not Available | Positive | 2968773 - 2970023 | 46126.1 |
| glycosyl transferase family 1 | B0O44_104328 | Not Available | Positive | 2970393 - 2971373 | 36465.0 |
| hypothetical protein | B0O44_104329 | Not Available | Positive | 2971503 - 2971931 | 15626.5 |
| hypothetical protein | B0O44_104330 | Not Available | Negative | 2971989 - 2972273 | 11188.5 |
| abc-type fe3+/spermidine/putrescine transport system atpase subunit | B0O44_104331 | Not Available | Negative | 2972523 - 2973515 | 37178.1 |
| outer membrane protein with beta-barrel domain | B0O44_104332 | Not Available | Negative | 2973596 - 2974402 | 30456.5 |
| hypothetical protein | B0O44_104333 | Not Available | Negative | 2974409 - 2975143 | 27538.2 |
| rna polymerase sigma-70 factor (ecf subfamily) | B0O44_104334 | Not Available | Negative | 2975124 - 2975591 | 17826.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

