Pedobacter nutrimenti strain DSM 27372

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nutrimenti strain DSM 27372 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolism. This trait is essential for its ecological role, as it allows the organism to thrive in oxygen-rich environments. The strain possesses flagella, which are tail-like structures that enable motility, suggesting that it can actively move towards favorable conditions or nutrient sources. The genetic makeup of Pedobacter nutrimenti strain DSM 27372 is characterized by a single replicon, which refers to the presence of one circular piece of DNA that contains all the genetic information necessary for its functions and reproduction. This simplicity in its genomic structure can imply a streamlined metabolic process, adapted to its environmental niche. The strain is cataloged under the accession number QKLU00000000.1, which provides a reference for researchers seeking to access its genomic data for further studies. From a biological and ecological perspective, the aerobic nature of Pedobacter nutrimenti strain DSM 27372, along with its motility, positions it as a potentially important player in its ecosystem. Its ability to navigate through its environment and utilize available oxygen may contribute to nutrient cycling and the breakdown of organic materials, further highlighting its significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nutrimenti
Strainstrain DSM 27372

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nutrimenti strain DSM 27372 Ga0070246_121, whole genome

Gene Summary

Adenine Count

1672028 bp

Thymine Count

1662865 bp

Guanine Count

1202051 bp

Cytosine Count

1178159 bp

Genome Length

5716991 bp

Protein-coding Genes

4924 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolase family 18 (putative chitinase)B0O44_103420Not AvailablePositive2352667 - 235359634720.6
hypothetical proteinB0O44_103421Not AvailableNegative2353615 - 23538819882.06
ycii-related domain-containing proteinB0O44_103422Not AvailableNegative2353917 - 235425212343.7
hypothetical proteinB0O44_103423Not AvailableNegative2354269 - 235485922759.5
antitoxin component ywqk of ywqjk toxin-antitoxin moduleB0O44_103424Not AvailablePositive2354928 - 235554823600.8
signal transduction histidine kinaseB0O44_103425Not AvailablePositive2355629 - 235759974769.2
rnd family efflux transporter mfp subunitB0O44_103426Not AvailableNegative2357656 - 235873839228.1
multidrug efflux pump subunit acrbB0O44_103427Not AvailableNegative2358728 - 2361988119150.0
outer membrane protein tolcB0O44_103428Not AvailableNegative2362000 - 236335850684.4
hypothetical proteinB0O44_103429Not AvailableNegative2363474 - 236380912866.9

Displaying genes 2051 – 2060 of 4979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.