Pedobacter nutrimenti strain DSM 27372

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nutrimenti strain DSM 27372 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolism. This trait is essential for its ecological role, as it allows the organism to thrive in oxygen-rich environments. The strain possesses flagella, which are tail-like structures that enable motility, suggesting that it can actively move towards favorable conditions or nutrient sources. The genetic makeup of Pedobacter nutrimenti strain DSM 27372 is characterized by a single replicon, which refers to the presence of one circular piece of DNA that contains all the genetic information necessary for its functions and reproduction. This simplicity in its genomic structure can imply a streamlined metabolic process, adapted to its environmental niche. The strain is cataloged under the accession number QKLU00000000.1, which provides a reference for researchers seeking to access its genomic data for further studies. From a biological and ecological perspective, the aerobic nature of Pedobacter nutrimenti strain DSM 27372, along with its motility, positions it as a potentially important player in its ecosystem. Its ability to navigate through its environment and utilize available oxygen may contribute to nutrient cycling and the breakdown of organic materials, further highlighting its significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nutrimenti
Strainstrain DSM 27372

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nutrimenti strain DSM 27372 Ga0070246_121, whole genome

Gene Summary

Adenine Count

1672028 bp

Thymine Count

1662865 bp

Guanine Count

1202051 bp

Cytosine Count

1178159 bp

Genome Length

5716991 bp

Protein-coding Genes

4924 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cu(i)/ag(i) efflux system membrane protein cusa/silaB0O44_103400Not AvailableNegative2330260 - 233219772019.2
czca family heavy metal efflux pumpB0O44_103401Not AvailableNegative2332194 - 233349248255.7
copper chaperone copzB0O44_103402Not AvailableNegative2333545 - 233390712900.6
hypothetical proteinB0O44_103403Not AvailableNegative2334008 - 233440314575.8
arac-like dna-binding proteinB0O44_103404Not AvailablePositive2334528 - 233568544123.5
peptidase c10-like proteinB0O44_103405Not AvailablePositive2335753 - 233658631855.2
gamma-glutamyltranspeptidase/glutathione hydrolaseB0O44_103406Not AvailableNegative2336592 - 233848169051.8
arac family transcriptional regulatorB0O44_103407Not AvailablePositive2338685 - 233948530473.3
peptidase s41-like proteinB0O44_103408Not AvailablePositive2339558 - 234132167051.1
outer membrane receptor protein involved in fe transportB0O44_103409Not AvailableNegative2341360 - 234375690023.8

Displaying genes 2031 – 2040 of 4979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.