Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| topoisomerase-like dna binding c4 zinc finger protein | B0O44_102697 | Not Available | Positive | 1873163 - 1873918 | 29060.6 |
| transposase | B0O44_1031 | Not Available | Positive | 1874479 - 1874811 | 12571.5 |
| hypothetical protein | B0O44_1032 | Not Available | Negative | 1875137 - 1875667 | 20084.3 |
| hypothetical protein | B0O44_1033 | Not Available | Negative | 1875673 - 1876653 | 37876.2 |
| hypothetical protein | B0O44_1034 | Not Available | Negative | 1876660 - 1876977 | 11674.4 |
| rna polymerase sigma-70 factor (ecf subfamily) | B0O44_1035 | Not Available | Positive | 1877481 - 1878068 | 23358.5 |
| fecr family protein | B0O44_1036 | Not Available | Positive | 1878198 - 1879301 | 40787.5 |
| tonb-linked susc/raga family outer membrane protein | B0O44_1037 | Not Available | Positive | 1879583 - 1882843 | 120341.0 |
| susd-like starch-binding protein associating with outer membrane | B0O44_1038 | Not Available | Positive | 1882854 - 1884230 | 51252.4 |
| cytochrome oxidase cu insertion factor (sco1/senc/prrc family) | B0O44_1039 | Not Available | Positive | 1884242 - 1885729 | 57282.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

