Pedobacter nutrimenti strain DSM 27372

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter nutrimenti strain DSM 27372 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolism. This trait is essential for its ecological role, as it allows the organism to thrive in oxygen-rich environments. The strain possesses flagella, which are tail-like structures that enable motility, suggesting that it can actively move towards favorable conditions or nutrient sources. The genetic makeup of Pedobacter nutrimenti strain DSM 27372 is characterized by a single replicon, which refers to the presence of one circular piece of DNA that contains all the genetic information necessary for its functions and reproduction. This simplicity in its genomic structure can imply a streamlined metabolic process, adapted to its environmental niche. The strain is cataloged under the accession number QKLU00000000.1, which provides a reference for researchers seeking to access its genomic data for further studies. From a biological and ecological perspective, the aerobic nature of Pedobacter nutrimenti strain DSM 27372, along with its motility, positions it as a potentially important player in its ecosystem. Its ability to navigate through its environment and utilize available oxygen may contribute to nutrient cycling and the breakdown of organic materials, further highlighting its significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter nutrimenti
Strainstrain DSM 27372

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter nutrimenti strain DSM 27372 Ga0070246_121, whole genome

Gene Summary

Adenine Count

1672028 bp

Thymine Count

1662865 bp

Guanine Count

1202051 bp

Cytosine Count

1178159 bp

Genome Length

5716991 bp

Protein-coding Genes

4924 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protoheme ix farnesyltransferaseB0O44_102637Not AvailablePositive1812136 - 181303833497.0
cytochrome c oxidase subunit 3B0O44_102638Not AvailablePositive1813047 - 181362521577.5
cytochrome c oxidase subunit 3B0O44_102639Not AvailablePositive1813656 - 181437827347.5
caa(3)-type oxidase subunit ivB0O44_102640Not AvailablePositive1814397 - 181475313497.1
protein sco1/2B0O44_102641Not AvailablePositive1814755 - 181545926668.2
putative membrane proteinB0O44_102642Not AvailablePositive1815472 - 181605021952.9
rna polymerase sigma-70 factor (ecf subfamily)B0O44_102643Not AvailablePositive1816196 - 181681324016.0
fecr family proteinB0O44_102644Not AvailablePositive1816930 - 181789836385.9
tonb-linked susc/raga family outer membrane proteinB0O44_102645Not AvailablePositive1817934 - 1821584135669.0
susd-like starch-binding protein associating with outer membraneB0O44_102646Not AvailablePositive1821595 - 182306454275.1

Displaying genes 1571 – 1580 of 4979 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.