Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nutrimenti |
| Strain | strain DSM 27372 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1672028 bp
Thymine Count
1662865 bp
Guanine Count
1202051 bp
Cytosine Count
1178159 bp
Genome Length
5716991 bp
Protein-coding Genes
4924 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellum-specific peptidoglycan hydrolase flgj | B0O44_102406 | Not Available | Negative | 1533096 - 1534037 | 35767.4 |
| flagellum-specific peptidoglycan hydrolase flgj | B0O44_102407 | Not Available | Negative | 1534038 - 1534655 | 23426.9 |
| putative o-methyltransferase yrrm | B0O44_102408 | Not Available | Negative | 1534657 - 1535286 | 23806.8 |
| putative holliday junction resolvase | B0O44_102409 | Not Available | Negative | 1535299 - 1535715 | 15677.0 |
| dna polymerase-3 subunit delta' | B0O44_102410 | Not Available | Positive | 1535822 - 1536970 | 43412.3 |
| cell fate regulator yaat (psp1 superfamily) | B0O44_102411 | Not Available | Positive | 1537095 - 1538390 | 49175.0 |
| gliding motility-associated lipoprotein gldh | B0O44_102412 | Not Available | Positive | 1538383 - 1538862 | 18031.6 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | B0O44_102413 | Not Available | Negative | 1539441 - 1540742 | 47941.4 |
| zinc carboxypeptidase | B0O44_102414 | Not Available | Positive | 1540834 - 1543305 | 92804.7 |
| tonb-linked susc/raga family outer membrane protein | B0O44_102415 | Not Available | Positive | 1543777 - 1546902 | 112722.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

