Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter | DD563_04885 | Not Available | Negative | 1030998 - 1031681 | 24378.4 |
| lipoprotein-releasing abc transporter permease subunit | DD563_04890 | Not Available | Negative | 1031674 - 1032963 | 46540.1 |
| proline--trna ligase | DD563_04895 | Not Available | Negative | 1033165 - 1034511 | 50297.9 |
| ai-2e family transporter | DD563_04905 | Not Available | Positive | 1035091 - 1036158 | 37847.4 |
| chromosomal replication initiator dnaa | DD563_04910 | Not Available | Positive | 1036158 - 1036832 | 23483.3 |
| rna degradosome polyphosphate kinase | DD563_04915 | Not Available | Positive | 1036881 - 1039055 | 80912.0 |
| exopolyphosphatase | DD563_04920 | Not Available | Positive | 1039115 - 1040659 | 56568.7 |
| hypothetical protein | DD563_04925 | Not Available | Negative | 1040666 - 1041043 | 13564.5 |
| endonuclease | DD563_04930 | Not Available | Negative | 1041075 - 1042085 | 37308.2 |
| molecular chaperone djla | DD563_04935 | Not Available | Negative | 1042082 - 1042765 | 25196.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
