Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DD563_04835 | Not Available | Positive | 1019775 - 1020659 | 32930.3 |
| amino acid abc transporter permease | DD563_04840 | Not Available | Positive | 1020694 - 1021500 | 30577.5 |
| glutamine synthetase | DD563_04845 | Not Available | Positive | 1021533 - 1022849 | 47833.3 |
| glutamine amidotransferase | DD563_04850 | Not Available | Positive | 1022924 - 1023601 | 24631.3 |
| glutamine synthetase | DD563_04855 | Not Available | Positive | 1023601 - 1024959 | 50094.7 |
| fad-dependent oxidoreductase | DD563_04860 | Not Available | Positive | 1024964 - 1026268 | 46665.1 |
| hypothetical protein | DD563_04865 | Not Available | Positive | 1026337 - 1027038 | 24991.1 |
| hypothetical protein | DD563_04870 | Not Available | Negative | 1027042 - 1029333 | 83061.2 |
| duf4864 domain-containing protein | DD563_04875 | Not Available | Negative | 1029480 - 1029884 | 15107.2 |
| lactate dehydrogenase | DD563_04880 | Not Available | Negative | 1029957 - 1030940 | 33314.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
