Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytic transglycosylase | DD563_04735 | Not Available | Negative | 999585 - 1000262 | 24079.0 |
| hypothetical protein | DD563_04740 | Not Available | Positive | 1000405 - 1001676 | 45738.7 |
| asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit b | DD563_04745 | Not Available | Positive | 1001750 - 1003261 | 55131.7 |
| thioesterase | DD563_04750 | Not Available | Positive | 1003266 - 1003760 | 18824.4 |
| hypothetical protein | DD563_04755 | Not Available | Positive | 1003837 - 1004238 | 14528.1 |
| bola family transcriptional regulator | DD563_04760 | Not Available | Negative | 1004242 - 1004499 | 9350.06 |
| molecular chaperone dnaj | DD563_04765 | Not Available | Positive | 1004576 - 1005199 | 23757.8 |
| epimerase | DD563_04770 | Not Available | Negative | 1005274 - 1006236 | 33855.0 |
| peptide-methionine (r)-s-oxide reductase | DD563_04775 | Not Available | Negative | 1006266 - 1006736 | 17312.5 |
| cobaltochelatase subunit cobs | DD563_04780 | Not Available | Positive | 1006886 - 1007872 | 36693.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
